Oligonucleotide Microarray Data for Escherichia coli

CEL Files for Oligonucleotide Arrays



Exp. Medium Carbon Source Aeration Growth Stage and Other Relevant Information Files
1 M9 glucose aerobic mid log phase 1a.CEL
1b.CEL
2 M9 glucose aerobic midway between log phase and stationary phase 2a.CEL
2b.CEL
3 M9 glucose aerobic early stationary phase 3a.CEL
3b.CEL
4 M9 glucose aerobic late (24 hours) stationary phase 4a.CEL
4b.CEL
5 M9 glycerol aerobic mid log phase 5a.CEL
5b.CEL
6 M9 glucose anaerobic, shift to aerobic 15 min after shift 6a.CEL
6b.CEL
7 M9 glucose anaerobic,shift to aerobic 30 min after shift 7a.CEL
7b.CEL
8 M9 glucose anaerobic, shift to aerobic 60 min after shift 8a.CEL
8b.CEL
9 M9 glucose aerobic mid log phase, 42°C 9a.CEL
9b.CEL
10 M9 glucose aerobic mid log phase, 20°C 10a.CEL
10b.CEL
11 M9 glucose aerobic starvation, withdrawing of glucose at mid log phase 11a.CEL
11b.CEL
12 LB   aerobic mid log phase 12a.CEL
12b.CEL
13 LB   anaerobic mid log phase 13a.CEL
13b.CEL
14 M9 glucose aerobic midway between log phase and stationary phase 14a.CEL
14b.CEL

When using the above data, please reference "Transcriptome analysis of Escherichia coli using high-density oligonucleotide arrays" Nucleic Acids Research, 30(17):3732-3738, 2002.



Exp. Medium Growth Phase Serum Files
E1,E2 Luria-Bertani Exponential Hfq antiserum E1.CEL
E2.CEL
S1,S2 Luria-Bertani Stationary Hfq antiserum S1.CEL
S2.CEL
M M63 Exponential Hfq antiserum M.CEL
E1,E2 control Luria-Bertani Exponential Preimmune serum E1_control.CEL
E2_control.CEL
S1,S2 control Luria-Bertani Stationary Preimmune serum S1_control.CEL
S2_control.CEL
M control M63 Exponential Preimmune serum M_control.CEL

When using the above data, please reference "Global analysis of small RNA and mRNA targets of Hfq" Molecular Microbiology, 50(4):1111-1124, 2003.



Contact:
btjaden@wellesley.edu