How to Read This Report

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This report includes two main views: Overview, which displays a visualization of your personal genomic report as an interactive bubble chart, and Comparison, which provides three visualizations and a table report that allows you to compare your personal genomic data to one of four famous genomes. You can toggle between these two main views and the Glossary by using the tabs at the top of the tool.

Overview:

This report displays a bubble chart visualization of your gene variant report. A gene variant can affect a person's physical and medical traits. Each gene variant is represented by a bubble. There are two views to this visualization, "Graph" and "Category", which can be toggled in the filter bar above the visualization.

In the Graph view, bubbles are organized by the certainty of the scientific evidence on a particular gene variant as well as by the potential health effect of the gene variant. There are three levels of certainty; uncertain, likely, and well-established. There are also three levels of potential health effect; low, medium, and high.

In the Category view, gene variants may appear in multiple categories and therefore multiple bubbles will represent one gene variant. When you click on a gene variant bubble in one category, all bubbles representing the same gene variant will be highlighted. Variants will remain highlighted between the Graph and Category views.

Comparison:

This view displays four tools for comparing your personal genomic data to a famous genome: a venn diagram, a bar visualization, a sunburst visualization, and a table of gene variants. You can click on the corresponding button on the top left corner of the tool to change views. You can change to which famous genome you compare your data by using the radio buttons in the filter menu and clicking "Apply Comparison".

In the sunburst and bar visualizations, each circle or line represents a personal genomic report and each colored filled segment represents a gene variant. The variants that exist in more than one circle or line represent the variants that you share. In the venn diagram, each bubble represents a gene variant. The bubbles in the left circle represent your unique variants, while bubbles in the right are those that only the comparison genome contains. Bubbles in the middle represent the variants that you share with the famous genome selected.

Hover over and click on a colored segment or bubble to learn more information about a gene variant. Information including the variant’s name, clinical importance, potential effect, allele frequency, and a summary about the effects it is associated with will appear in the sidebar titled Variant Information located at the right of your window. You can click the "Save" button to save a variant so that you can read about it later as well.

In the table, row represents a gene variant and the first two columns indicate carrier status. The rows with checkmarks are gene variants or '(carrier)' in both columns represent the variants that you share with the comparison genome. The table includes information about the variant name, a summary about the effects it is associated with, clinical importance, certainty of evidence, potential effect, inheritance pattern, health category, and frequency in the population.

In all views, you can filter variants by category, health effect, or certainty of evidence by clicking on their corresponding buttons at the top of the visualization. After selecting a filter, you can press Apply Filters to implement it.

You can also search the variants by pressing "control-f" or typing in the Search Bar.

If you're having trouble viewing the report, please refresh your page and let us know that you had this problem in the open response questions at the end of this study. If the problem persists, please email wellesleyhcilab@gmail.com.

Key


Benign
Pathogenic
Protective
Pharma/Drug Response


Rarity Potentially Affected
Rarity Carrier




Less RiskMore Risk



Select report type:

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Potential Impact:
Certainty of Evidence:
Category:

Search:


Variant Information

Information about a selected variant will appear here. Saved variants will appear in a list below.

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Key


Benign
Pathogenic
Protective
Pharma/Drug Response


Rarity Potentially Affected
Rarity Carrier




Less RareMore Rare


Filters
Compare with:
George Church
Esther Dyson
Steven Pinker
Carl Zimmer
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You
George Church

Variant Information

Information about a selected variant will appear here. Saved variants will appear in a list below.
Summary:
Certainty of Evidence:
Clinical Importance:
Potential Impact:
Inheritance:
Rarity:
Category:

Glossary

A

Anatomical and Congenital: Contains gene variants associated with birth defects as well as gene variants associated with birth defects and genetic syndromes affecting multiple aspects of biology. (Ex. Increased or decreased susceptibility to cleft palate or dwarfism)

B

Benign: Not associated to a disease.

Blood: Contains gene variants associated with the blood. (Ex. Increased or decreased susceptibility to Hemophilia or Anemia).

Breathing: Contains gene variants associated with the organs involved in breathing such as the lungs. (Ex. Increased or decreased susceptibility to Bronchitis or COPD).

C

Cancer: Contains gene variants associated with an increased or decreased risk of cancer. (Ex. Increased or decreased susceptibility to Breast cancer or Melanoma).

Carrier Status: Carrier Status is important in determining the gene variant’s effect. Each person inherits two variants of each gene, one from their biological father and one from their biological mother. A person is either a carrier of or affected by each gene.

Carrier: A carrier for a particular gene variant is heterozygous for a gene variant with a recessive effect. This means that a carrier will not be affected by the gene variant; however if their child receives this gene variant from both parents, the child will potentially be affected.

Certainty: The certainty of a gene variant describes how well-established the scientific data is behind the effect of the gene variant.

Compound Heterozygous: The variants of two different genes work together to create the same effect as being homozygous for one of the genes.

D

Dominant: Dominant variants are expected to have the reported impact when just one copy is inherited (heterozygous).

Drug Response: Contains gene variants that may affect how one reacts to medications.

E

No words yet!

F

No words yet!

G

Genital and Urinary: Contains gene variants that are associated with the genitals and reproductive organs as well as gene variants that are associated with urinary system, which includes the kidneys. (Ex. Increased or decreased susceptibility to Kidney Disease or Endometriosis).

H

Health Category: The health category of the gene variant is aspect of individual biology and health that the gene variant may affect. Many times, gene variants affect multiple aspects of individual biology or multiple areas of the body, and therefore fall into/appear in multiple categories.

Health Effect: Health Effect is based on three different variables. Severity, treatability and risk of the disease associated with the variant. The higher the health effect score, the more important it is to discuss with a medical professional.

Hearing and Vision: Contains gene variants that are associated with hearing and vision. (Ex. Increased or decreased susceptibility to Deafness or Age-related Macular Degeneration).

Heart and Circulatory: Contains gene variants that are associated with the heart and the circulatory system that are not specifically associated with the blood. (Ex. Increased or decreased susceptibility to heart defects or arrhythmia).

Heterozygous: The two variants of the gene are different (the person has two different variants).

Homozygous: The two variants of the gene are the same.

I

Immune System: Contains gene variants that are associated with the immune system and autoimmune diseases. (Ex. Increased or decreased susceptibility to the flu or Celiac Sprue disease).

J

No words yet!

K

No words yet!

L

Likely: The research behind the effect of a gene variant is not as well-established, and therefore the effect described is only likely linked to the gene variant.

M

Mental and Behavioral: Contains gene variants that are associated with mental and behavioral disorders. (Ex. Increased or decreased susceptibility to depression or schizophrenia).

Metabolism: Contains gene variants that are associated with the chemical transformations that happen throughout the body. (Ex. Increased or decreased susceptibility to Cushing’s Disease or high cholesterol).

Mouth, Liver, and Digestive: Contains gene variants associated with the teeth, gums, liver, and the rest of the digestive system. (Ex. Increased or decreased susceptibility to Crohn’s disease or gum disease).

Muscular, Skeletal, and Connective Tissue: Contains gene variants associated with the muscles, bones, and connective tissue. (Ex. Increased or decreased susceptibility to Arthritis or Muscular Dystrophy).

N

Nervous System: Contains gene variants associated with the brain and the spinal cord / nervous system. (Ex. Increased or decreased susceptibility to Seizures or Multiple Sclerosis).

O

Other: Contains gene variants that are benign, do not fit into the other health categories, or that may have been missed when sorted into health categories. Variants defined as "other" encompasses various possibilities. Some variants have a strong effect when homozygous and a weaker effect when heterozygous, or others only seem to have an effect on traits when another variant is also present.

P

Pathogenic: May cause disease.

Pharmacogenetic / drug response: May influence the effect of a medication.

Potential Effect: The potential effect of a gene variant describes how it may influence a person's chances of developing a disease or what medication may work best for them.

Potentially Affected: Someone who is potentially affected by a gene variant has a higher risk or likelihood of developing the conditions associated with that gene variant.

Protective: May prevent disease.

Q

No words yet!

R

Rarity: Rarity, also know as frequency in population or allele frequency, describes the percentage of the population that has this genetic variant. The smaller the frequency, the less common it is among the population and the more interesting it is to a healthcare professional. If there is “No Freq Recorded,” the frequency of the gene variant is unknown.

Recessive: Recessive variants are not expected to have the reported impact unless homozygous or compound heterozygous.

Risk: Risk, also known as penetrance, describes how often individuals carrying the variant develop the associated disease. A variant with a higher penetrance means that a person with this variant is more likely to develop the associated disease. (Note: These scores are considered irrelevant for "benign" variants. Benign variants includes those which affect traits not considered to be medical/health issues, e.g. eye color.

S

Severity: How severe the disease caused by a variant is, if left untreated. For protective variants this is the severity of the disease the variant protects against, and for pharmacogenetic variants it is the severity of consequences if the variant was not considered when administering a drug.

Skin: Contains gene variants associated with the skin. (Ex. Increased or decreased susceptibility to Eczema or Psoriasis).

T

Treatability: How treatable the disease caused by the variant is. A higher score indicates a more treatable effect. Variants which could be treated are considered to have higher clinical importance.

U

Uncertain: The research behind the effect of a gene variant is uncertain, and therefore there is little evidence that links the effect to the gene variant.

V

No words yet!

W

Well-established: The research behind the effect of a gene variant is well-established.

X

No words yet!

Y

No words yet!

Z

No words yet!

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