Pantoea vagans C9-1 plasmid pPag2, complete sequence - 1..165693 229 proteins Location Strand Length PID Gene Synonym Code COG Product 500..601 - 33 308189207 - Pvag_pPag20001 - - hypothetical protein 1037..1249 - 70 308189208 - Pvag_pPag20002 - - hypothetical protein 1833..2699 + 288 308189209 repA Pvag_pPag20003 - - replication protein repa 3390..3488 + 32 308189210 - Pvag_pPag20004 - - hypothetical protein 3511..3618 - 35 308189211 - Pvag_pPag20005 - - hypothetical protein 3835..5043 + 402 308189212 parA Pvag_pPag20006 - COG1192D plasmid partition protein a 5040..6026 + 328 308189213 parB Pvag_pPag20007 - COG1475K plasmid partitioning protein parb 6354..6452 - 32 308189214 - Pvag_pPag20008 - - hypothetical protein 6751..6954 + 67 308189215 - Pvag_pPag20009 - - hypothetical protein 7080..8015 + 311 308189216 - Pvag_pPag20010 - - ATP-dependent endonuclease of the old family 7688..8020 - 110 308189217 rsd1 Pvag_pPag20011 - COG4974L tyrosine recombinase xerd 8025..8477 - 150 308189218 rsd3 Pvag_pPag20012 - - resolvase 8889..9404 - 171 308189219 ymdB Pvag_pPag20013 - COG2110R conserved hypothetical protein, high-affinity ADP-ribose binding domain protein 9561..9686 + 41 308189220 - Pvag_pPag20014 - - hypothetical protein 9686..10639 + 317 308189221 ytl2 Pvag_pPag20015 - COG5464S hypothetical protein 11010..11597 - 195 308189222 - Pvag_pPag20016 - - hypothetical protein 11824..13038 + 404 308189223 - Pvag_pPag20017 - - hypothetical protein 13071..14339 - 422 308189224 terF Pvag_pPag20018 - COG2310T tellurite resistance protein terf 14415..14990 - 191 308189225 terE Pvag_pPag20019 - COG2310T tellurium resistance protein tere 15065..15643 - 192 308189226 terD Pvag_pPag20020 - COG2310T tellurium resistance protein terd 15700..16743 - 347 308189227 terC Pvag_pPag20021 - COG0861P tellurium resistance protein terc 16778..17233 - 151 308189228 terB Pvag_pPag20022 - COG3793P tellurium resistance protein terb 17253..18419 - 388 308189229 terA Pvag_pPag20023 - COG4110R tellurium resistance protein tera 18419..18997 - 192 308189230 terZ Pvag_pPag20024 - COG2310T tellurium resistance protein terz 19307..20398 + 363 308189231 - Pvag_pPag20025 - COG0458EF carbamoyl-phosphate synthase large chain 20410..21543 + 377 308189232 - Pvag_pPag20026 - - hypothetical protein 21536..22300 + 254 308189233 - Pvag_pPag20027 - - hypothetical protein 22315..23406 + 363 308189234 - Pvag_pPag20028 - - hypothetical protein 23409..24347 + 312 308189235 - Pvag_pPag20029 - COG2301G hypothetical protein 24984..25598 - 204 308189236 - Pvag_pPag20030 - COG2801L transposase for insertion sequence element is986/is6110 25853..26089 - 78 308189237 - Pvag_pPag20031 - COG2963L hypothetical protein 26540..26860 - 106 308189238 - Pvag_pPag20032 - - hypothetical protein 26862..27707 - 281 308189239 - Pvag_pPag20033 - - hypothetical protein 28039..29604 - 521 308189240 - Pvag_pPag20034 - COG3593L hypothetical protein 30199..30324 - 41 308189241 - Pvag_pPag20035 - - hypothetical protein 30272..30382 + 36 308189242 - Pvag_pPag20036 - - hypothetical protein 30388..31416 + 342 308189243 xerD Pvag_pPag20037 - - xerd-like integrase/recombinase 31836..31970 + 44 308189244 - Pvag_pPag20038 - - hypothetical protein 32374..32640 - 88 308189245 - Pvag_pPag20039 - - protein umuc 32943..33041 - 32 308189246 - Pvag_pPag20040 - - hypothetical protein 33286..35376 + 696 308189247 acr Pvag_pPag20041 - COG1629P ferric achromobactin receptor precursor 35413..36321 + 302 308189248 cbrA Pvag_pPag20042 - COG0614P achromobactin-binding periplasmic protein precursor 36318..37304 + 328 308189249 cbrB Pvag_pPag20043 - COG0609P achromobactin transport system permease protein cbrb 37294..38325 + 343 308189250 cbrC Pvag_pPag20044 - COG0609P achromobactin transport system permease protein cbrc 38341..39135 + 264 308189251 cbrD Pvag_pPag20045 - COG1120PH achromobactin transport ATP-binding protein cbrd 39122..39868 + 248 308189252 - Pvag_pPag20046 - COG4114R hypothetical protein 39889..40044 + 51 308189253 - Pvag_pPag20047 - - hypothetical protein 40298..40579 + 93 308189254 - Pvag_pPag20048 - - hypothetical protein 40821..40925 - 34 308189255 - Pvag_pPag20049 - - hypothetical protein 41097..41303 + 68 308189256 - Pvag_pPag20050 - - hypothetical protein 41344..41682 - 112 308189257 - Pvag_pPag20051 - - hypothetical protein 41676..41876 + 66 308189258 - Pvag_pPag20052 - - hypothetical protein 42057..42404 + 115 308189259 - Pvag_pPag20053 - - hypothetical protein 43035..43157 + 40 308189260 - Pvag_pPag20054 - - hypothetical protein 43173..43436 + 87 308189261 - Pvag_pPag20055 - - hypothetical protein 43556..43648 - 30 308189262 - Pvag_pPag20056 - - hypothetical protein 43709..43804 - 31 308189263 - Pvag_pPag20057 - - hypothetical protein 43776..44096 - 106 308189264 marR Pvag_pPag20058 - COG1846K hth-type transcriptional regulator sarz 44081..44317 + 78 308189265 - Pvag_pPag20059 - - hypothetical protein 44332..44631 - 99 308189266 - Pvag_pPag20060 - - hypothetical protein 44628..46172 - 514 308189267 - Pvag_pPag20061 - COG0840NT methyl-accepting chemotaxis protein iii 46407..48008 - 533 308189268 - Pvag_pPag20062 - COG5001T signal transduction protein 48034..48132 + 32 308189269 - Pvag_pPag20063 - - hypothetical protein 48151..48252 + 33 308189270 - Pvag_pPag20064 - - hypothetical protein 48239..48400 - 53 308189271 - Pvag_pPag20065 - - hypothetical protein 48352..48528 + 58 308189272 - Pvag_pPag20066 - - hypothetical protein 48554..48781 + 75 308189273 - Pvag_pPag20067 - - hypothetical protein 49491..49604 + 37 308189274 - Pvag_pPag20068 - - hypothetical protein 49784..50644 - 286 308189275 - Pvag_pPag20069 - - dmt superfamily transporter 50653..50781 + 42 308189276 - Pvag_pPag20070 - - hypothetical protein 50768..51655 + 295 308189277 - Pvag_pPag20071 - COG0583K transcriptional regulator, lysr family 52122..52640 + 172 308189278 srlA1 Pvag_pPag20072 - COG3730G pts system, glucitol/sorbitol-specific iic component 2 52655..53644 + 329 308189279 srlE1 Pvag_pPag20073 - COG3732G pts system, glucitol/sorbitol-specific iibc component 53659..54027 + 122 308189280 srlB1 Pvag_pPag20074 - COG3731G glucitol/sorbitol-specific phosphotransferase enzyme iia component 54042..54821 + 259 308189281 srlD1 Pvag_pPag20075 - COG1028IQR sorbitol-6-phosphate dehydrogenase 54867..55229 + 120 308189282 srlM1 Pvag_pPag20076 - COG4578K sorbitol operon activator protein 55319..56086 + 255 308189283 srlR1 Pvag_pPag20077 - COG1349KG sorbitol utilization operon repressor 56090..57052 + 320 308189284 srlQ1 Pvag_pPag20078 - COG0794M sugar phosphate isomerase 57301..58164 + 287 308189285 - Pvag_pPag20079 - COG0596R abhydrolase domain-containing protein 7 58403..59176 - 257 308189286 - Pvag_pPag20080 - - hypothetical protein 59169..60566 - 465 308189287 - Pvag_pPag20081 - COG3505U hypothetical protein 60524..60691 - 55 308189288 - Pvag_pPag20082 - - hypothetical protein 60840..61124 - 94 308189289 gpV Pvag_pPag20083 - COG4540R baseplate assembly protein v 61559..62269 + 236 308189290 - Pvag_pPag20084 - COG2199T cellulose synthesis regulatory protein 62274..62537 - 87 308189291 gpS Pvag_pPag20085 - - tail completion protein s 62616..63356 - 246 308189292 orfB Pvag_pPag20086 - COG2801L transposase insk for insertion sequence element is150 63325..63738 - 137 308189293 - Pvag_pPag20087 - - low calcium response locus protein s 63855..63971 - 38 308189294 - Pvag_pPag20088 - - hypothetical protein 64234..64410 + 58 308189295 - Pvag_pPag20089 - - hypothetical protein 64516..64707 + 63 308189296 - Pvag_pPag20090 - - hypothetical protein 64817..65023 - 68 308189297 ydgT Pvag_pPag20091 - - hemolysin expression-modulating protein 65222..65314 + 30 308189298 - Pvag_pPag20092 - - hypothetical protein 65937..66206 + 89 308189299 piv1 Pvag_pPag20093 - COG3547L transposase 66318..66479 + 53 308189300 - Pvag_pPag20094 - - hypothetical protein 66651..66818 + 55 308189301 - Pvag_pPag20095 - COG0841V multidrug resistance protein mexb 66849..66956 + 35 308189302 - Pvag_pPag20096 - - hypothetical protein 67171..68133 - 320 308189303 srlQ3 Pvag_pPag20097 - COG0794M sugar phosphate isomerase 68137..68904 - 255 308189304 srlR3 Pvag_pPag20098 - COG1349KG repressor of srl operon 69003..69353 - 116 308189305 srlM3 Pvag_pPag20099 - COG4578K sorbitol/glucitol operon activator protein 69398..70177 - 259 308189306 srlD3 Pvag_pPag20100 - COG1028IQR sorbitol-6-phosphate dehydrogenase 70191..70559 - 122 308189307 srlB3 Pvag_pPag20101 - COG3731G glucitol/sorbitol-specific phosphotransferase enzyme iia component 70574..71458 - 294 308189308 srlE3 Pvag_pPag20102 - COG3732G pts system, glucitol/sorbitol-specific iibc component 71559..72107 - 182 308189309 srlA3 Pvag_pPag20103 - COG3730G pts system, glucitol/sorbitol-specific iic component 2 72251..72367 + 38 308189310 - Pvag_pPag20104 - - hypothetical protein 72795..73475 - 226 308189311 - Pvag_pPag20105 - - hypothetical protein 73687..74082 + 131 308189312 - Pvag_pPag20106 - - hypothetical protein 74060..74365 + 101 308189313 - Pvag_pPag20107 - - hypothetical protein 74523..74750 - 75 308189314 - Pvag_pPag20108 - - hypothetical protein 74583..74843 + 86 308189315 - Pvag_pPag20109 - - hypothetical protein 75165..75782 - 205 308189316 tetR Pvag_pPag20110 - COG1309K hypothetical protein 77433..78068 + 211 308189317 yviA Pvag_pPag20111 - COG2323S hypothetical protein 78462..78614 + 50 308189318 - Pvag_pPag20112 - - hypothetical protein 78618..78818 + 66 308189319 - Pvag_pPag20113 - - hypothetical protein 78852..78950 + 32 308189320 - Pvag_pPag20114 - - hypothetical protein 78961..79518 + 185 308189321 - Pvag_pPag20115 - COG3706T hypothetical protein 79562..81343 - 593 308189322 - Pvag_pPag20116 - COG2200T signal transduction protein 81489..81596 + 35 308189323 - Pvag_pPag20117 - - hypothetical protein 81676..82044 + 122 308189324 - Pvag_pPag20118 - - hypothetical protein 82191..82355 + 54 308189325 - Pvag_pPag20119 - - methyl-accepting chemotaxis protein i 82494..82856 + 120 308189326 tas Pvag_pPag20120 - COG0840NT methyl-accepting chemotaxis aspartate transducer 83097..83258 + 53 308189327 - Pvag_pPag20121 - - hypothetical protein 83105..83323 + 72 308189328 - Pvag_pPag20122 - - hypothetical protein 83244..83486 - 80 308189329 - Pvag_pPag20123 - - hypothetical protein 83755..83877 + 40 308189330 - Pvag_pPag20124 - - hypothetical protein 83936..84139 + 67 308189331 - Pvag_pPag20125 - - hypothetical protein 83997..84188 + 63 308189332 - Pvag_pPag20126 - - hypothetical protein 84217..84339 + 40 308189333 - Pvag_pPag20127 - - hypothetical protein 84309..84986 + 225 308189334 - Pvag_pPag20128 - COG2203T hypothetical protein 85150..85266 + 38 308189335 - Pvag_pPag20129 - - hypothetical protein 85893..87143 - 416 308189336 - Pvag_pPag20130 - - hypothetical protein 87193..87756 - 187 308189337 nuc Pvag_pPag20131 - COG1502I phospholipase d precursor 87956..88225 + 89 308189338 - Pvag_pPag20132 - - hypothetical protein 88272..88460 - 62 308189339 - Pvag_pPag20133 - - hypothetical protein 88580..88675 - 31 308189340 - Pvag_pPag20134 - - hypothetical protein 88695..89057 + 120 308189341 - Pvag_pPag20135 - - hypothetical protein 88800..89060 - 86 308189342 - Pvag_pPag20136 - - hypothetical protein 89097..89234 - 45 308189343 - Pvag_pPag20137 - - hypothetical protein 89424..89627 + 67 308189344 - Pvag_pPag20138 - - hypothetical protein 89644..89904 - 86 308189345 - Pvag_pPag20139 - - hypothetical protein 89983..90261 - 92 308189346 - Pvag_pPag20140 - - hypothetical protein 90332..90625 - 97 308189347 ycgZ Pvag_pPag20141 - - hypothetical protein 90815..90949 - 44 308189348 - Pvag_pPag20142 - - hypothetical protein 91183..92757 - 524 308189349 - Pvag_pPag20143 - COG3436L hypothetical protein 92777..93124 - 115 308189350 - Pvag_pPag20144 - COG3436L hypothetical protein 93121..93594 - 157 308189351 - Pvag_pPag20145 - COG2963L hypothetical protein 94190..94516 - 108 308189352 - Pvag_pPag20146 - - hypothetical protein 94669..94983 - 104 308189353 - Pvag_pPag20147 - - hypothetical protein 94983..95816 - 277 308189354 - Pvag_pPag20148 - - hypothetical protein 95930..96289 - 119 308189355 tnpA1 Pvag_pPag20149 - COG4644L transposase for transposon tn3926 96386..96589 + 67 308189356 - Pvag_pPag20150 - - hypothetical protein 96821..97327 - 168 308189357 - Pvag_pPag20151 - - hypothetical protein 97924..98148 + 74 308189358 - Pvag_pPag20152 - COG3422S hypothetical protein 98303..98539 - 78 308189359 - Pvag_pPag20153 - - hypothetical protein 99182..99286 - 34 308189360 - Pvag_pPag20154 - - hypothetical protein 99263..99400 + 45 308189361 - Pvag_pPag20155 - - hypothetical protein 99418..100353 - 311 308189362 rep2 Pvag_pPag20156 - - replication initiation protein 2 101269..102261 + 330 308189363 cbs Pvag_pPag20157 - COG0031E pyridoxal-phosphate dependent enzyme family/ornithine cyclodeaminase family protein 102254..103288 + 344 308189364 - Pvag_pPag20158 - COG2423E pyridoxal-phosphate dependent enzyme family/ornithine cyclodeaminase family protein 103292..104281 + 329 308189365 - Pvag_pPag20159 - COG2175Q hypothetical protein 104268..106007 + 579 308189366 lgrD Pvag_pPag20160 - COG1020Q linear gramicidin synthetase subunit d 106007..106708 + 233 308189367 bacT Pvag_pPag20161 - COG3208Q s-acyl fatty acid synthase thioesterase, medium chain 106753..107607 + 284 308189368 - Pvag_pPag20162 - COG0439I hypothetical protein 107601..108026 + 141 308189369 - Pvag_pPag20163 - - hypothetical protein 108037..109209 + 390 308189370 - Pvag_pPag20164 - COG1541H hypothetical protein 109232..111055 + 607 308189371 asnB Pvag_pPag20165 - COG0367E asparagine synthetase 111065..112015 + 316 308189372 - Pvag_pPag20166 - - hypothetical protein 112133..112936 - 267 308189373 bcfH Pvag_pPag20167 - COG1651O hypothetical protein 112908..113036 + 42 308189374 - Pvag_pPag20168 - - hypothetical protein 113008..115737 - 909 308189375 traI Pvag_pPag20169 - COG0863L DNA methylase 116152..117153 - 333 308189376 xylS Pvag_pPag20170 - COG2207K xyldlegf operon transcriptional activator 117313..117435 - 40 308189377 - Pvag_pPag20171 - - hypothetical protein 117460..118506 + 348 308189378 oxd Pvag_pPag20172 - - aldoxime dehydratase 118544..119410 + 288 308189379 - Pvag_pPag20173 - COG4313C signal peptide-containing protein 119522..121036 + 504 308189380 ami Pvag_pPag20174 - COG0154J amidase 121087..121734 + 215 308189381 nthA Pvag_pPag20175 - - nitrile hydratase alpha subunit 121731..122390 + 219 308189382 nthB Pvag_pPag20176 - - nitrile hydratase beta subunit 122387..122821 + 144 308189383 - Pvag_pPag20177 - - hypothetical protein 122852..123061 + 69 308189384 - Pvag_pPag20178 - - hypothetical protein 123072..123836 + 254 308189385 - Pvag_pPag20179 - COG5446S hypothetical protein 123840..124400 + 186 308189386 - Pvag_pPag20180 - COG0406G hypothetical protein 124556..125494 - 312 308189387 piv3 Pvag_pPag20181 - COG3547L transposase 125696..125896 + 66 308189388 - Pvag_pPag20182 - - hypothetical protein 125850..126188 - 112 308189389 - Pvag_pPag20183 - - cytoplasmic protein 126185..126433 - 82 308189390 - Pvag_pPag20184 - - hypothetical protein 126842..127240 - 132 308189391 - Pvag_pPag20185 - - hypothetical protein 127589..128746 - 385 308189392 umuC Pvag_pPag20186 - COG0389L protein umuc 128784..129863 - 359 308189393 yqjM Pvag_pPag20187 - COG1902C NADH oxidase 129977..130378 + 133 308189394 - Pvag_pPag20188 - COG1733K hypothetical protein 130744..131007 - 87 308189395 - Pvag_pPag20189 - - phosphohydrolase, mutt/nudix family 131101..131247 + 48 308189396 - Pvag_pPag20190 - - hypothetical protein 131237..131818 - 193 308189397 - Pvag_pPag20191 - - hypothetical protein 132134..132880 - 248 308189398 - Pvag_pPag20192 - COG2814G hypothetical protein 133343..134320 - 325 308189399 adh6 Pvag_pPag20193 - COG1064R alcohol dehydrogenase 134538..134666 + 42 308189400 - Pvag_pPag20194 - - hypothetical protein 134708..135124 - 138 308189401 - Pvag_pPag20195 - COG1765O hypothetical protein 135170..135616 - 148 308189402 bbsD Pvag_pPag20196 - COG1028IQR hypothetical protein 135974..136105 + 43 308189403 - Pvag_pPag20197 - - hypothetical protein 136528..136725 + 65 308189404 - Pvag_pPag20198 - - hypothetical protein 136739..137824 - 361 308189405 mrkD Pvag_pPag20199 - COG3539NU fimbrin-like protein fimi precursor 137769..140327 - 852 308189406 bcfC Pvag_pPag20200 - COG3188NU outer membrane usher protein fimd precursor 140345..141013 - 222 308189407 fimC Pvag_pPag20201 - COG3121NU hypothetical protein 141058..141579 - 173 308189408 bcfF Pvag_pPag20202 - COG3539NU type-1 fimbrial protein, a chain precursor 142212..142676 + 154 308189409 - Pvag_pPag20203 - COG2826L transposase insi for insertion sequence element is30b/c/d 143220..144881 + 553 308189410 tse Pvag_pPag20204 - COG0840NT methyl-accepting chemotaxis serine transducer 144960..145109 + 49 308189411 - Pvag_pPag20205 - - hypothetical protein 145607..147469 - 620 308189412 trg Pvag_pPag20206 - COG0840NT methyl-accepting chemotaxis citrate transducer 147911..148291 + 126 308189413 - Pvag_pPag20207 - - arac-type transcriptional regulator 148301..148759 + 152 308189414 - Pvag_pPag20208 - COG2207K hth-type transcriptional activator rhas 149209..149655 + 148 308189415 - Pvag_pPag20209 - - hypothetical protein 150142..150306 + 54 308189416 orfA Pvag_pPag20210 - - hypothetical protein 150963..152153 - 396 308189417 - Pvag_pPag20211 - COG0624E carboxypeptidase g2 152143..152811 - 222 308189418 tnpR Pvag_pPag20212 - COG1961L transposon tn552 DNA-invertase binr 152957..154819 + 620 308189419 tnpA3 Pvag_pPag20213 - COG4644L transposase for transposon tn3926 154825..155934 + 369 308189420 tnpA5 Pvag_pPag20214 - COG4644L transposase for transposon tn3926 155970..156071 - 33 308189421 - Pvag_pPag20215 - - hypothetical protein 156099..156656 + 185 308189422 - Pvag_pPag20216 - - hypothetical protein 156524..156877 + 117 308189423 - Pvag_pPag20217 - - hypothetical protein 156921..157106 - 61 308189424 - Pvag_pPag20218 - - hypothetical protein 157149..158528 - 459 308189425 otsA Pvag_pPag20219 - COG0380G alpha,alpha-trehalose-phosphate synthase (udp- forming) 158539..159132 - 197 308189426 - Pvag_pPag20220 - COG1853R flavoprotein oxygenase 159116..160168 - 350 308189427 gutB Pvag_pPag20221 - COG1063ER alcohol dehydrogenase class 3 160220..161395 - 391 308189428 mmfH Pvag_pPag20222 - COG1960I acyl-CoA dehydrogenase/oxidase 161759..162202 + 147 308189429 arsR Pvag_pPag20223 - COG0640K transcriptional regulator, arsr family 162161..162271 - 36 308189430 - Pvag_pPag20224 - - hypothetical protein 162237..162395 + 52 308189431 - Pvag_pPag20225 - - hypothetical protein 162585..162851 + 88 308189432 - Pvag_pPag20226 - - hypothetical protein 163007..163411 + 134 308189433 - Pvag_pPag20227 - - hypothetical protein 163456..164205 - 249 308189434 otsB Pvag_pPag20228 - COG1877G trehalose-6-phosphate phophatase, biosynthetic 164249..165679 - 476 308189435 - Pvag_pPag20229 - COG2814G mfs family transporter