| Experiment ID | Experiment Description | Reference Sample | Time (minutes) |
| alpha 0 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 0 |
| alpha 7 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 7 |
| alpha 14 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 14 |
| alpha 21 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 21 |
| alpha 28 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 28 |
| alpha 35 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 35 |
| alpha 42 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 42 |
| alpha 49 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 49 |
| alpha 56 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 56 |
| alpha 63 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 63 |
| alpha 70 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 70 |
| alpha 77 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 77 |
| alpha 84 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 84 |
| alpha 91 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 91 |
| alpha 98 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 98 |
| alpha 105 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 105 |
| alpha 112 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 112 |
| alpha 119 | Cell-cycle: Alpha factor arrest and release | unsynchronized culture | 119 |
| Elu 0 | Cell-cycle: Elutriation | unsynchronized culture | 0 |
| Elu 30 | Cell-cycle: Elutriation | unsynchronized culture | 30 |
| Elu 60 | Cell-cycle: Elutriation | unsynchronized culture | 60 |
| Elu 90 | Cell-cycle: Elutriation | unsynchronized culture | 90 |
| Elu 120 | Cell-cycle: Elutriation | unsynchronized culture | 120 |
| Elu 150 | Cell-cycle: Elutriation | unsynchronized culture | 150 |
| Elu 180 | Cell-cycle: Elutriation | unsynchronized culture | 180 |
| Elu 210 | Cell-cycle: Elutriation | unsynchronized culture | 210 |
| Elu 240 | Cell-cycle: Elutriation | unsynchronized culture | 240 |
| Elu 270 | Cell-cycle: Elutriation | unsynchronized culture | 270 |
| Elu 300 | Cell-cycle: Elutriation | unsynchronized culture | 300 |
| Elu 330 | Cell-cycle: Elutriation | unsynchronized culture | 330 |
| Elu 360 | Cell-cycle: Elutriation | unsynchronized culture | 360 |
| Elu 390 | Cell-cycle: Elutriation | unsynchronized culture | 390 |
| cdc15 10 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 10 |
| cdc15 30 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 30 |
| cdc15 50 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 50 |
| cdc15 70 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 70 |
| cdc15 90 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 90 |
| cdc15 110 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 110 |
| cdc15 130 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 130 |
| cdc15 150 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 150 |
| cdc15 170 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 170 |
| cdc15 190 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 190 |
| cdc15 210 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 210 |
| cdc15 230 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 230 |
| cdc15 250 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 250 |
| cdc15 270 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 270 |
| cdc15 290 | Cell-cycle: cdc15 arrest and release | unsynchronized culture | 290 |
| spo 0 | Sporulation | time 0 | 0 |
| spo 2 | Sporulation | time 0 | 120 |
| spo 5 | Sporulation | time 0 | 300 |
| spo 7 | Sporulation | time 0 | 420 |
| spo 9 | Sporulation | time 0 | 540 |
| spo 11 | Sporulation | time 0 | 660 |
| spo5 2 | Sporulation | 5 hour timepoint | 120 |
| spo5 7 | Sporulation | 5 hour timepoint | 420 |
| spo5 11 | Sporulation | 5 hour timepoint | 660 |
| spo- early | Sporulation in ndt80 knockout | 2 hour timepoint | 120 |
| spo- mid | Sporulation in ndt80 knockout | 5 hour timepoint | 300 |
| heat 0 | Heat Shock 25-37C | time 0 | 0 |
| heat 10 | Heat Shock 25-37C | time 0 | 10 |
| heat 20 | Heat Shock 25-37C | time 0 | 20 |
| heat 40 | Heat Shock 25-37C | time 0 | 40 |
| heat 80 | Heat Shock 25-37C | time 0 | 80 |
| heat 160 | Heat Shock 25-37C | time 0 | 160 |
| dtt 15 | DTT Shock 1mm | time 0 | 15 |
| dtt 30 | DTT Shock 1mm | time 0 | 30 |
| dtt 60 | DTT Shock 1mm | time 0 | 60 |
| dtt 120 | DTT Shock 1mm | time 0 | 120 |
| cold 0 | Cold Shock 25-11 | time 0 | 0 |
| cold 20 | Cold Shock 25-12 | time 0 | 20 |
| cold 40 | Cold Shock 25-13 | time 0 | 40 |
| cold 160 | Cold Shock 25-14 | time 0 | 160 |
| diau a | Diauxic Shift | time 0 | 540 |
| diau b | Diauxic Shift | time 0 | 660 |
| diau c | Diauxic Shift | time 0 | 780 |
| diau d | Diauxic Shift | time 0 | 900 |
| diau e | Diauxic Shift | time 0 | 1020 |
| diau f | Diauxic Shift | time 0 | 1140 |
| diau g | Diauxic Shift | time 0 | 1260 |