| Class | Description |
|---|---|
| EvaluateGenePredictions |
The
EvaluateGenePredictions class takes a file of
gene predictions output by the HMM application
and compares it to a file of documented genes to determine
how well the predictions match up with the documented genes -
the program reports the sensitivity and specificity of the
gene predictions. |
| HMM |
An instance of the
HMM class represents a
hidden Markov model, including the model's states, transitions,
and the optimal annotation (i.e., parse) of an observation
sequence. |
| State |
An instance of the
State class represents a
single state in a hidden Markov model, including the state's
name, a collection of all characters that the state can output,
and the probability of outputting each character. |